Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs77028352 | chr20:30254548 | G/A | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs77363559 | chr20:30398907 | T/C | 0.000118 | 67 | 27.92 | 8.18 | 7.6 | KM Plot |
UVM | rs77547431 | chr20:30424374 | T/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs77802901 | chr20:30229220 | C/G | 6.36E-5 | 67 | 27.92 | 8.25 | 7.6 | KM Plot |
UVM | rs78633027 | chr20:30370694 | C/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs78638364 | chr20:30361587 | G/A | 0.000118 | 67 | 27.92 | 8.18 | 7.6 | KM Plot |
UVM | rs78856759 | chr20:30377176 | C/T | 0.000118 | 67 | 27.92 | 8.18 | 7.6 | KM Plot |
UVM | rs79052331 | chr20:30379933 | C/T | 0.000118 | 67 | 27.92 | 8.18 | 7.6 | KM Plot |
UVM | rs79270944 | chr20:30410895 | T/C | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs7957044 | chr12:132608889 | T/C | 3.82E-7 | 66 | 31.83 | 23.63 | 0.73 | KM Plot |
UVM | rs7959406 | chr12:9807117 | A/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7959726 | chr12:9807331 | A/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7961262 | chr12:9804226 | C/G | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs7961416 | chr12:9804413 | C/G | 0.000112 | 67 | 7.6 | 21.8 | 27.62 | KM Plot |
UVM | rs79616906 | chr20:30254790 | G/A | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |